HsaALTD1019921-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204459878-204460403:-
Coord C1 exon
chr1:204460328-204460403
Coord A exon
NA
Coord C2 exon
chr1:204459878-204459941
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGCAGGT
5' ss Score
-3.47
3' ss Seq
TCCCTGCCCCCAACTCCCAGGCA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTGAATGATGACCAGAGCCCCTCCACCTTGAACTACCTCGTCCATCTCCAAGAGAGGCCTGTCAAGCAGACCATCA
Seq A exon
NA
Seq C2 exon
GCAGGCCCTGAGTCTTCTGTTCGACACTTACCACAATGAGGTGGATGCCTTCCTGCTGGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-22-21,23-21-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGATGACCAGAGCCCCT
R:
GTCGAACAGAAGACTCAGGGC
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains