RnoALTD0022209-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49878009-49878781:+
Coord C1 exon
chr13:49878009-49878084
Coord A exon
NA
Coord C2 exon
chr13:49878718-49878781
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGCAGGT
5' ss Score
-3.47
3' ss Seq
TTCTCCCCCCACGTCCCCAGGCA
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTGAATGATGACCAGAGCCCTTCCACCTTGAACTACCTCATCCATCTTCAAGAGCGGCCAGTCAAGCAGACCATCA
Seq A exon
NA
Seq C2 exon
GCAGGCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGGTGGATGCCTTCCTACTGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-14-8,15-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGACCAGAGCCCTTCCA
R:
AACAGAAGACTCAAGGCCTGC
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]