RnoALTA0029217-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49878009-49878781:+
Coord C1 exon
chr13:49878009-49878088
Coord A exon
chr13:49878718-49878721
Coord C2 exon
chr13:49878722-49878781
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCTCCCCCCACGTCCCCAGGCA
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTGAATGATGACCAGAGCCCTTCCACCTTGAACTACCTCATCCATCTTCAAGAGCGGCCAGTCAAGCAGACCATCAGCAG
Seq A exon
GCAG
Seq C2 exon
GCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGGTGGATGCCTTCCTACTGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-15-9,15-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATCCATCTTCAAGAGCGG
R:
GAAGGCATCCACCTCATTGTG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]