MmuALTA0013281-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134971356-134972451:+
Coord C1 exon
chr1:134971356-134971435
Coord A exon
chr1:134972388-134972391
Coord C2 exon
chr1:134972392-134972451
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCTCACCCCATATCCCCAGGCA
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTGAATGACGACCAGAGCCCTTCCACCTTGAACTACCTCATCCATCTCCAAGAGAGGCCAGTCAAGCAGACCATCAGCAG
Seq A exon
GCAG
Seq C2 exon
GCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGGTGGACGCCTTCCTGCTGGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-9-8,9-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCATCTCCAAGAGAGGCC
R:
GGAAGGCGTCCACCTCATTG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: