HsaALTA1025767-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204459878-204460403:-
Coord C1 exon
chr1:204460324-204460403
Coord A exon
chr1:204459938-204459941
Coord C2 exon
chr1:204459878-204459937
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCCTGCCCCCAACTCCCAGGCA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTGAATGATGACCAGAGCCCCTCCACCTTGAACTACCTCGTCCATCTCCAAGAGAGGCCTGTCAAGCAGACCATCAGCAG
Seq A exon
GCAG
Seq C2 exon
GCCCTGAGTCTTCTGTTCGACACTTACCACAATGAGGTGGATGCCTTCCTGCTGGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-23-22,23-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGATGACCAGAGCCCCT
R:
GTCGAACAGAAGACTCAGGGC
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains