HsaALTD1020379-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8770670-8776892:-
Coord C1 exon
chr2:8776748-8776892
Coord A exon
chr2:8776671-8776747
Coord C2 exon
chr2:8770670-8770832
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GCTTTTGTATTTTTTAAAAGGAC
3' ss Score
7.82
Exon sequences
Seq C1 exon
GACACTTACCGAAGAAGGCAGATGCAGAGGACCATCACTCGCCAGATGTCCTTTGATCTTACAAAACTGCTGGTTACCGAGGACTGGTTCAGTGACATCAGTCCCCAGACCATGAGAAGATTACTTAATATTGTTTCTGTGACAG
Seq A exon
GTGACTTTTGTCTCTTATTGTCTATGATAGTTAATAAGCTTTAGCATTCACAAAACCATTTAATTTCAGAAACAAAG
Seq C2 exon
GACGATTACTGAGAGCCAATCAGATTAGTTTCAACTGGGACAGGCTTGCTAGCTGGATCAACCTTACTGAGCAGTGGCCATACCGGACTTCATGGCTCATATTATATTTGGAAGAGACTGAAGGTATTCCAGATCAAATGACATTAAAAACCATCTACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-51-50,52-50-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(9.3=100)
A:
NA
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCAGAGGACCATCAC
R:
CTAGCAAGCCTGTCCCAGTTG
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains