HsaEX0034352 @ hg38
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8770670-8778727:-
Coord C1 exon
chr2:8778639-8778727
Coord A exon
chr2:8776748-8776892
Coord C2 exon
chr2:8770670-8770832
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGACGACGTGCTGTTTCAGGAC
3' ss Score
7.53
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGATACAGGAAGATGCTGACAGAAGAGTTTCACAGAACAGCCTTGGGGAGATGACAAAACTTGGTAGCAAGACAGCCCTCAATAGACGG
Seq A exon
GACACTTACCGAAGAAGGCAGATGCAGAGGACCATCACTCGCCAGATGTCCTTTGATCTTACAAAACTGCTGGTTACCGAGGACTGGTTCAGTGACATCAGTCCCCAGACCATGAGAAGATTACTTAATATTGTTTCTGTGACAG
Seq C2 exon
GACGATTACTGAGAGCCAATCAGATTAGTTTCAACTGGGACAGGCTTGCTAGCTGGATCAACCTTACTGAGCAGTGGCCATACCGGACTTCATGGCTCATATTATATTTGGAAGAGACTGAAGGTATTCCAGATCAAATGACATTAAAAACCATCTACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-'48-50,'48-48,51-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(5.6=100)
A:
PF076939=KAP_NTPase=FE(9.3=100)
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Skipping Isoform:
ENST00000256707fB18276
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACAGGAAGATGCTGACAGA
R:
TGGTTTTTAATGTCATTTGATCTGGA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development