RnoEX6028356 @ rn6
Exon Skipping
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44265540-44270647:+
Coord C1 exon
chr6:44265540-44265628
Coord A exon
chr6:44267023-44267167
Coord C2 exon
chr6:44270485-44270647
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATTGGTGCTGTCGTTTCAGGAC
3' ss Score
8.43
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAACACAGGAGGACACTGACAGAAGAGTTTCACAGAACAGCCTTGGGGAGATGACAAAGCTTGGGAGCAAAACGGCTCTCAACAGAAGG
Seq A exon
GACACTTACCGCAGAAGACAGATGCAGAGAACCATCACGAGGCAGATGTCCTTTGATCTCACAAAGCTGCTAGTCACTGAGGATTGGTTCAGTGACATCAGCCCTCAGACCATGAGACGGCTACTCAATATTGTTTCTGTGACAG
Seq C2 exon
GGCGGCTACTAAGAGCCAATCAGATTACTTTCAACTGGGACAGGCTAGCCAGCTGGATCAACCTCACCGAGCAGTGGCCGTACCGGACGTCTTGGCTTATACTATATCTGGAAGAGACTGAAGGTCTCCCTGATCAGATGACCTTAAAGACCATCTATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176-'37-34,'37-32,38-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(5.6=100)
A:
PF076939=KAP_NTPase=FE(9.3=100)
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACAGGAGGACACTGACA
R:
TGGTCTTTAAGGTCATCTGATCAGG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]