GgaEX6032189 @ galGal3
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98778667-98781658:-
Coord C1 exon
chr3:98781570-98781658
Coord A exon
chr3:98780928-98781072
Coord C2 exon
chr3:98778667-98778829
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGTGTCACTGTCAGGAT
3' ss Score
8.17
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GACTGCATGAAGAGATTGACAGAAGAGTTTCTCAGAACAGCCTTGGAGAGATGACCAAGCTTGGCAGCAAAACGGCTCTCAATAGGCGG
Seq A exon
GATACTTACCGAAGACGCCAGATGCAACGCACCATTACTCGCCAGATGTCCTTTGATTTGACCAAGCTTTTGGTTACAGAGGATTGGTTCAGTGATATCAGTCCTCAGACTATGAGAAGATTACTAAATATAGTTTCAGTGACAG
Seq C2 exon
GTCGCTTATTGAGAGCAAATCAAATCACCTTCAATTGGGATAGGCTTGCTAGTTGGATCAATCTCACAGAGCAGTGGCCCTATAGAACGTCGTGGCTCATACTGCATCTTGAAGAGACTGAAGGTGTTCCAGATCAGCTGACTTTAAAAACCATCTATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409-'28-27,'28-26,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(5.6=100)
A:
PF076939=KAP_NTPase=FE(9.3=100)
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCATGAAGAGATTGACAGA
R:
TGGTTTTTAAAGTCAGCTGATCTGGA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]