DreEX6055382 @ danRer10
Exon Skipping
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34948943-34963988:-
Coord C1 exon
chr17:34963900-34963988
Coord A exon
chr17:34949205-34949349
Coord C2 exon
chr17:34948943-34949105
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTAATATATTGGTGTGTAGGAC
3' ss Score
5.07
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATGGCAAGAGGACGTGGACAGGAAGTTGTCTCAAAACAGTCTCGGCGATCAGGGCCGGCAGGGCAGCAAAACAGCACTGAACCGCCGG
Seq A exon
GACACGTACCGCAGGAGGCAGATGCAGCGCTCCGTCACCAGACAGATGTCCTTTGACCTCACCAAGCTGCTGGTTACTGAAGACTGGTTTAGCGACATCAGCCCTCAGACCATGAGGAGACTGCTCAACATAGTGTCAGTCACAG
Seq C2 exon
GGCGCCTTCTGAGAGCCAATCAGATCATCTTTAACTGGGACCGGCTGGCATCCTGGATCAACCTGACCGAGGAGTGGCCATACCGGACATCTTGGATCATCCTGTTCCTGGAGGAAACTGATGGAGTGACAGACCTTGTCACACTCAAGACCATCTATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(5.7=100)
A:
PF076939=KAP_NTPase=FE(9.4=100)
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCAAGAGGACGTGGAC
R:
TGGTCTTGAGTGTGACAAGGT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]