MmuEX6080433 @ mm9
Exon Skipping
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25696365-25701917:+
Coord C1 exon
chr12:25696365-25696453
Coord A exon
chr12:25698162-25698306
Coord C2 exon
chr12:25701755-25701917
Length
145 bp
Sequences
Splice sites
3' ss Seq
CACTGGTGCTGTTGTTTCAGGAT
3' ss Score
7.84
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAGTGCAGGAGGATGCTGACAGAAGAGTTTCACAGAACAGCCTTGGGGAGATGACAAAGCTTGGTAGCAAAACGGCCCTCAACAGAAGG
Seq A exon
GATACTTACCGCAGAAGGCAGATGCAGAGAACCATCACGAGGCAGATGTCCTTTGATCTCACAAAGCTGCTGGTTACTGAGGATTGGTTCAGTGACATCAGTCCACAAACCATGAGACGGTTACTCAATATTGTTTCGGTGACAG
Seq C2 exon
GGCGGCTACTAAGAGCCAATCAGATTACTTTCAACTGGGACAGGCTAGCCAGCTGGATCAACCTTACTGAGCAGTGGCCATACCGGACGTCCTGGCTCATACTATATCTGGGAGAGACTGAAGGTATTCCTGACCAGATGACGCTAAAGACCATCTATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-'26-23,'26-22,27-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(5.6=100)
A:
PF076939=KAP_NTPase=FE(15.2=100)
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCAGGAGGATGCTGACA
R:
TGGTCTTTAGCGTCATCTGGT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: