BtaEX6045934 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88510354-88514127:+
Coord C1 exon
chr11:88510354-88510442
Coord A exon
chr11:88511889-88512033
Coord C2 exon
chr11:88513965-88514127
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGATGCTACCCCGTTTCAGGAC
3' ss Score
8.46
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATGCAGGAAGATGCTGACAGAAGAGTTTCACAAAACAGCCTTGGAGAGATGACAAAACTTGGTAGCAAGACGGCCCTCAATAGACGG
Seq A exon
GACACTTACCGAAGAAGGCAGATGCAGCGCACGATTACCCGGCAGATGTCCTTCGACCTCACGAAACTGCTGGTTACGGAGGACTGGTTCAGTGACATAAGCCCGCAGACCATGAGGAGACTGCTCAACATTGTTTCTGTGACAG
Seq C2 exon
GACGATTACTGAGAGCCAACCAGATAAGTTTCAACTGGGATAGGCTTGCTAGCTGGATCAACCTAACTGAGCAGTGGCCGTACAGAACTTCATGGCTCATATTGTATTTGGAAGAGACCGAAGGTATCCCAGATCAAATGACATTAAAAACCATCTATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963-'25-28,'25-26,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(5.6=100)
A:
PF076939=KAP_NTPase=FE(9.3=100)
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCAGGAAGATGCTGACA
R:
TGGTTTTTAATGTCATTTGATCTGGG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]