HsaALTD1021277-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37998318-37999050:+
Coord C1 exon
chr3:37998318-37998364
Coord A exon
NA
Coord C2 exon
chr3:37998912-37999050
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GACGATGCCTTCCGCCCCAGGGC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCATGTCTAGCCTCCAGGAGAGAAAGGCTGCCTTCAGCCGGGCTGTG
Seq A exon
NA
Seq C2 exon
GGCTTCATCCAGGCCAAGGGCTACCCGACCTACACCAACGTGGAGGTGGTGAACGACGGCGCCGAGTCGGCCGCGTTCAAGCAGCTCTTCCGGACTTGGTCTGAGAAGCGGCGCAGGAACCAGAAGCTCGGCGGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-14-22,15-22-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(42.1=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(34.2=55.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTCTAGCCTCCAGGAGA
R:
CGCCGAGCTTCTGGTTCC
Band lengths:
180-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains