HsaALTD1021277-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37998318-37999050:+
Coord C1 exon
chr3:37998318-37998364
Coord A exon
chr3:37998365-37998598
Coord C2 exon
chr3:37998912-37999050
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
GACGATGCCTTCCGCCCCAGGGC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCATGTCTAGCCTCCAGGAGAGAAAGGCTGCCTTCAGCCGGGCTGTG
Seq A exon
GTGAGCCCTGGGGCTCTGTCTGAGAGGAACAGAGCACTGCCCTGGGGTCTGAGTGGGGAGGCAGCTCCGCCCCAGGGTCTAAGGGAGGAATCAGCCCTCCCCTAGAGTTTGAGTTGGGAAATCCTATGCTGGAGTCTTAAAGGGGAGGTAGCCCTGCCCTGGGAGCCCTGAGAGTAAAGACCAGGTGGCCTCTGAGAAACCATGTGTAAAAGGGGCACGTGGCCCTGCCTTCAG
Seq C2 exon
GGCTTCATCCAGGCCAAGGGCTACCCGACCTACACCAACGTGGAGGTGGTGAACGACGGCGCCGAGTCGGCCGCGTTCAAGCAGCTCTTCCGGACTTGGTCTGAGAAGCGGCGCAGGAACCAGAAGCTCGGCGGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-14-22,15-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(42.1=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(34.2=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTCTAGCCTCCAGGAGA
R:
CGCCGAGCTTCTGGTTCC
Band lengths:
180-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains