HsaALTD1021691-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121678678-121699458:+
Coord C1 exon
chr9:121678678-121678781
Coord A exon
NA
Coord C2 exon
chr9:121699325-121699458
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACT
5' ss Score
7.53
3' ss Seq
TCTTGTCCCCCCGTGCGCAGGGC
3' ss Score
10.42
Exon sequences
Seq C1 exon
AGTCGCCTCAAGAAAGGCCGGGCTCTCGGCGCAGCCTGCCTGGCAGCCTTTCCGAGAAGAGCCCCAGCATGGAGCCCTCGGCCGCCACGCCGTTCCGGGTCACG
Seq A exon
NA
Seq C2 exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAGCTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCCGCCGCCGCCGCCGCGGACAATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-8-9,11-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(29.9=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAAGGCCGGGCTCTC
R:
CTCTCATTGTCCGCGGCG
Band lengths:
231-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains