HsaALTD1021691-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121678678-121699458:+
Coord C1 exon
chr9:121678678-121678781
Coord A exon
chr9:121678782-121678917
Coord C2 exon
chr9:121699325-121699458
Length
136 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCC
5' ss Score
5.06
3' ss Seq
TCTTGTCCCCCCGTGCGCAGGGC
3' ss Score
10.42
Exon sequences
Seq C1 exon
AGTCGCCTCAAGAAAGGCCGGGCTCTCGGCGCAGCCTGCCTGGCAGCCTTTCCGAGAAGAGCCCCAGCATGGAGCCCTCGGCCGCCACGCCGTTCCGGGTCACG
Seq A exon
GTAACTATCTCTGCGTCACCAACACCGCCACTGCCACCACCATCACCACCTCGCCCGGGGTGCTGCTCTGTGACCCCACGGCCCCCCTTCCTGGAGCCTCATGGACCCGGAGAGCATCCGGCCTCCCTTGCTCTAG
Seq C2 exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAGCTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCCGCCGCCGCCGCCGCGGACAATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-8-9,11-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(29.9=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAAGGCCGGGCTCTC
R:
CTCTCATTGTCCGCGGCG
Band lengths:
231-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains