MmuALTD0003940-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35643888-35661625:+
Coord C1 exon
chr2:35643888-35643991
Coord A exon
chr2:35643992-35644124
Coord C2 exon
chr2:35661492-35661625
Length
133 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCC
5' ss Score
5.06
3' ss Seq
TCTTGTCGCCCCGCGCGCAGGGC
3' ss Score
7.71
Exon sequences
Seq C1 exon
AGTCGCCCCAAGAAAGGCCGGGCTCCCGGCGGAGCCTTCCCGGCAGCATGTCAGAGAAAAACCCCAGCATGGAGCCCTCGGCTTCAACCCCGTTCCGGGTCACG
Seq A exon
GTAACTATCTCTGCGTCACCACCGCCACTGCCACCACCATCACCACCTCGCCCTGCGGGGCTGTTCTGCGACCCCGCACCCCCCTTCCTGGAGCCTCATGGACCGGGAGAACATCCAGCCTCCCTTGCTCTAG
Seq C2 exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAACTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCAGCCGCCGCCGCCGCGGACAATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(29.9=77.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGCCCCAAGAAAGGC
R:
CTCTCATTGTCCGCGGCG
Band lengths:
238-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types