HsaALTD1023181-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000139626 | ITGB7
Description
integrin subunit beta 7 [Source:HGNC Symbol;Acc:HGNC:6162]
Coordinates
chr12:53192330-53192910:-
Coord C1 exon
chr12:53192691-53192910
Coord A exon
NA
Coord C2 exon
chr12:53192330-53192538
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
TATTGGCATCTACTACACAGGGA
3' ss Score
4.01
Exon sequences
Seq C1 exon
GCTTTGGTCGCTGCCAATGTGGAGTATGTCACTGTCATGCCAACCGCACGGGCAGAGCATGCGAATGCAGTGGGGACATGGACAGTTGCATCAGTCCCGAGGGAGGGCTCTGCAGTGGGCATGGACGCTGCAAATGCAACCGCTGCCAGTGCTTGGACGGCTACTATGGTGCTCTATGCGACCAATGCCCAGGCTGCAAGACACCATGCGAGAGACACCG
Seq A exon
NA
Seq C2 exon
GGACTGTGCAGAGTGTGGGGCCTTCAGGACTGGCCCACTGGCCACCAACTGCAGTACAGCTTGTGCCCATACCAATGTGACCCTGGCCTTGGCCCCTATCTTGGATGATGGCTGGTGCAAAGAGCGGACCCTGGACAACCAGCTGTTCTTCTTCTTGGTGGAGGATGACGCCAGAGGCACGGTCGTGCTCAGAGTGAGACCCCAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139626-39-28,40-28-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=51.4)
A:
NA
C2:
PF079657=Integrin_B_tail=FE(87.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACACCATGCGAGAGACAC
R:
CAGGGTCACATTGGTATGGGC
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains