MmuALTD1000531-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000001281 | Itgb7
Description
integrin beta 7 [Source:MGI Symbol;Acc:MGI:96616]
Coordinates
chr15:102216892-102217466:-
Coord C1 exon
chr15:102217260-102217466
Coord A exon
chr15:102217247-102217259
Coord C2 exon
chr15:102216892-102217097
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GACTGGCATTCACCGGACAGGGA
3' ss Score
4.13
Exon sequences
Seq C1 exon
GCTTTGGCCACTGCCAGTGTGGAGTATGTCACTGTCACGCCAACCACACCGGCAGAGCTTGCGAGTGCAGCAAGAGTGTAGACAGCTGTGTCAGTCCTGAAGGAGGGCTCTGCAGTGGGCACGGATACTGCAAATGCAACCGTTGCCAGTGCCTGGATGGCTACTACGGGGCTCTGTGTGACCAGTGCCTAGGCTGCAAGTCACCAT
Seq A exon
GTGAGCAGTACAG
Seq C2 exon
GGATTGTGCAGAGTGCGGGGCATTTGGTACCGGTCCCCTGGCAGCCAACTGTAGTGTGGTCTGTGCTGACGTGAATGTGACCTTGACCTTGGCCCCTAACTTGGATGATGGCTGGTGCAAAGAAAGGACAATAGACAACCAGCTGTTCTTCTTCCTGGTGGAGCATGCAGCCAGCGGGATCGTACTGAGAGTGAGACCCCAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001281-31-23,32-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=27.0),PF079748=EGF_2=WD(100=41.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTGACCAGTGCCTAGG
R:
CGTCAGCACAGACCACACTAC
Band lengths:
106-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types