HsaALTD1023665-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000140835 | CHST4
Description
carbohydrate sulfotransferase 4 [Source:HGNC Symbol;Acc:HGNC:1972]
Coordinates
chr16:71526251-71538746:+
Coord C1 exon
chr16:71526251-71526312
Coord A exon
chr16:71526313-71526495
Coord C2 exon
chr16:71536660-71538746
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTCTGTTTGTTCCTTAAAGGTC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTTAAAGCTGTTACTTTCACAGCTTCCTGGGAGCGAGTGCTTTCTCAAGCCCGTCTTGCAAG
Seq A exon
GTGGGTCCTTTTTTGTTTTTGGCAGAAGGGAGGGACAGTGAAATGTGCTCTGAGTAGGGACGGTTATGCAAAAGCAAGTAGGAGGAGGAAGCCAAGAGGGGAGTTGGTGAGTCAGAGGAGAAAAGCGCATGGCCCGGCTAGCAGTGAGCCTCTCAAAAGCAGCAGGGAAGCCCAAGCCACAAG
Seq C2 exon
GTCTTCCACTTCAGCACAATGCTACTGCCTAAAAAAATGAAGCTCCTGCTGTTTCTGGTTTCCCAGATGGCCATCTTGGCTCTATTCTTCCACATGTACAGCCACAACATCAGCTCCCTGTCTATGAAGGCACAGCCCGAGCGCATGCACGTGCTGGTTCTGTCTTCCTGGCGCTCTGGCTCTTCTTTTGTGGGGCAGCTTTTTGGGCAGCACCCAGATGTTTTCTACCTGATGGAGCCCGCCTGGCACGTGTGGATGACCTTCAAGCAGAGCACCGCCTGGATGCTGCACATGGCTGTGCGGGATCTGATACGGGCCGTCTTCTTGTGCGACATGAGCGTCTTTGATGCCTACATGGAACCTGGTCCCCGGAGACAGTCCAGCCTCTTTCAGTGGGAGAACAGCCGGGCCCTGTGTTCTGCACCTGCCTGTGACATCATCCCACAAGATGAAATCATCCCCCGGGCTCACTGCAGGCTCCTGTGCAGTCAACAGCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140835-1-4,2-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0068522=Sulfotransfer_1=WD(100=81.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACTTTCACAGCTTCCTGGG
R:
AGCTGCCCCACAAAAGAAGAG
Band lengths:
254-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains