HsaEX0073142 @ hg38
Exon Skipping
Gene
ENSG00000157429 | ZNF19
Description
zinc finger protein 19 [Source:HGNC Symbol;Acc:HGNC:12981]
Coordinates
chr16:71494954-71546333:-
Coord C1 exon
chr16:71546277-71546333
Coord A exon
chr16:71514004-71514157
Coord C2 exon
chr16:71494954-71495018
Length
154 bp
Sequences
Splice sites
3' ss Seq
TAACTGGTCTAAATTTTCAGTCT
3' ss Score
5.44
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GAAGGAGGAGAAGAAATGTGGTCGGAAGATGAGGAATGAGGTGGTCCATAAAGTGAG
Seq A exon
TCTGCAGATCAGCTTGGAAAGAGAGGCAGCCCTGGGGTCTATCTCCATGCCTGGTCCTGACTGGTCTTGGCTACCTGGATTTATTCTGGTCTTAACTGCTCTGTGAACTTCTGGAAACTCCCATTCCTGTCTTGGGCTCACACATAGCTCCCAG
Seq C2 exon
AGAAACACAGTGAAGTACTGACAGTAGAAATGATATGATGTCTGAGTTCAACTCCAGCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157429_MULTIEX1-2/5=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGGAGAAGAAATGTGGTCG
R:
CTGTTTTGCTGGAGTTGAACTC
Band lengths:
122-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development