HsaALTD1025236-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000144355 | DLX1
Description
distal-less homeobox 1 [Source:HGNC Symbol;Acc:HGNC:2914]
Coordinates
chr2:172084781-172085990:+
Coord C1 exon
chr2:172084781-172084881
Coord A exon
chr2:172084882-172084885
Coord C2 exon
chr2:172085312-172085990
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CCCGGCGCGCTCTGTTGCAGAGG
3' ss Score
7.93
Exon sequences
Seq C1 exon
TTTAATCAGACCCGTGCAGCCTCGAGCTGGAGTGGCCAGCTGGGCCTGGAGCAATGCGAGCGGGCCCCAGGGAGCGACAGCGGCGTTGGCGCAGCGGCCGA
Seq A exon
GTGA
Seq C2 exon
AGGAGCCCCGGCCGGGAAGTGTGGATGCGTCTTACCCGAGGCCGGGCCGCCTCGCCCGCTCTAGTCCAGCGGAGCCCGAGCGCCTCGGACCAATCCCCAGTGATTATGCAAGACAGCGGACCAATCAGCTCCGCCAGCTCATGAATATTTATGACCTTCGCTGAGTCAAAGCTTTGAACCGAGTTTGGGGAGCTCAGCAGCATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGAGGAGAGAAAGTCCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCGGGCAAGGCGGTGTTTATGGAGTTTGGGCCGCCCAACCAGCAAATGTCTCCTTCTCCCATGTCCCACGGGCACTACTCCATGCACTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144355-0-1,1-1,2-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.615
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCCTGGAGCAATGC
R:
GGGTAAGACGCATCCACACTT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains