HsaEX0019935 @ hg38
Exon Skipping
Gene
ENSG00000144355 | DLX1
Description
distal-less homeobox 1 [Source:HGNC Symbol;Acc:HGNC:2914]
Coordinates
chr2:172084740-172089677:+
Coord C1 exon
chr2:172084740-172084881
Coord A exon
chr2:172085312-172085990
Coord C2 exon
chr2:172088003-172089677
Length
679 bp
Sequences
Splice sites
3' ss Seq
CCCGGCGCGCTCTGTTGCAGAGG
3' ss Score
7.93
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGGAGGAGAAGCGCGGGTTCCTGGCTCTCCACGCGCACTGCTTTAATCAGACCCGTGCAGCCTCGAGCTGGAGTGGCCAGCTGGGCCTGGAGCAATGCGAGCGGGCCCCAGGGAGCGACAGCGGCGTTGGCGCAGCGGCCGA
Seq A exon
AGGAGCCCCGGCCGGGAAGTGTGGATGCGTCTTACCCGAGGCCGGGCCGCCTCGCCCGCTCTAGTCCAGCGGAGCCCGAGCGCCTCGGACCAATCCCCAGTGATTATGCAAGACAGCGGACCAATCAGCTCCGCCAGCTCATGAATATTTATGACCTTCGCTGAGTCAAAGCTTTGAACCGAGTTTGGGGAGCTCAGCAGCATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGAGGAGAGAAAGTCCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCGGGCAAGGCGGTGTTTATGGAGTTTGGGCCGCCCAACCAGCAAATGTCTCCTTCTCCCATGTCCCACGGGCACTACTCCATGCACTGTTTACACTCGGCGGGCCATTCGCAGCCCGACGGCGCCTACAGCTCAGCCTCGTCCTTCTCCCGACCGCTGGGCTACCCCTACGTCAACTCGGTCAGCAGCCACGCATCCAGCCCCTACATCAGTTCGGTGCAGTCCTACCCGGGCAGCGCCAGCCTCGCCCAGAGCCGCCTGGAGGACCCAG
Seq C2 exon
GTCAAGATCTGGTTCCAAAACAAGCGATCCAAGTTCAAGAAGCTGATGAAGCAGGGTGGGGCGGCTCTGGAGGGTAGTGCGTTGGCCAACGGTCGGGCCCTGTCTGCTGGCTCCCCACCCGTGCCGCCCGGCTGGAACCCTAACTCTTCATCCGGGAAGGGCTCAGGAGGAAACGCGGGCTCCTATATCCCCAGCTACACATCGTGGTACCCTTCAGCGCACCAAGAAGCTATGCAGCAACCCCAACTTATGTGAGGTTGCCCGCCCGTCTCCTTCTTGTCTCCCCGGCCCAGGTCCCTCCCGCCTCCAGGTCCATCCATCCCGTCCGGAAAAGAAGGACCCAGAGGGAAGAAGGAACAGTGGAGGCGGGACGCCCTCCATCTCCTCGGAGCCCCGCGAGGTCCGGCCCAGCAACTTCCCGGCATCCGCGCTCTAGCCTGAACCCTGGCCTGGGCCGAGCAGTGGCAGCAGAGAGTGGCCTCGGAGGGAAGCCACTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144355_MULTIEX1-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.615 C2=0.595
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PD(22.8=15.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCGCACTGCTTTAATCAGA
R:
CATAGCTTCTTGGTGCGCTGA
Band lengths:
346-1025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development