HsaALTD1026460-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr9:121326582-121327482:+
Coord C1 exon
chr9:121326582-121326682
Coord A exon
chr9:121326683-121326792
Coord C2 exon
chr9:121327308-121327482
Length
110 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
ACCAAGCTGTACCCTCCCAGGTA
3' ss Score
4.81
Exon sequences
Seq C1 exon
ACAAGGGCGGCACCTCCCGCGAGGGCGGGCAGACAGCCCCTGCCAGCACCCGCCTCTTCCAGGTCCGCGCCAACAGCGCTGGAGCCACCCGGGCTGTTGAG
Seq A exon
GTAATTTCCAGGTCCTGGAACACAGAAGGGATTGGCCTCCCTGAAACCTCCCAGCTCAATGACCAGATCTCCAGGCACAGGAACGGGGGCAGGGGATGGTGAATGACGGG
Seq C2 exon
GTATTGCCTAAGGCTGGTGCACTGAACTCCAACGATGCCTTTGTTCTGAAAACCCCCTCAGCCGCCTACCTGTGGGTGGGTACAGGAGCCAGCGAGGCAGAGAAGACGGGGGCCCAGGAGCTGCTCAGGGTGCTGCGGGCCCAACCTGTGCAGGTGGCAGAAGGCAGCGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180-142-128,143-128,144-128-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(8.7=10.5)
A:
NA
C2:
PF0062617=Gelsolin=FE(84.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGCCTCTTCCAGGTC
R:
CTCGCTGCCTTCTGCCAC
Band lengths:
226-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains