HsaALTD1026460-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr9:121326582-121327482:+
Coord C1 exon
chr9:121326582-121326682
Coord A exon
NA
Coord C2 exon
chr9:121327308-121327482
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
ACCAAGCTGTACCCTCCCAGGTA
3' ss Score
4.81
Exon sequences
Seq C1 exon
ACAAGGGCGGCACCTCCCGCGAGGGCGGGCAGACAGCCCCTGCCAGCACCCGCCTCTTCCAGGTCCGCGCCAACAGCGCTGGAGCCACCCGGGCTGTTGAG
Seq A exon
NA
Seq C2 exon
GTATTGCCTAAGGCTGGTGCACTGAACTCCAACGATGCCTTTGTTCTGAAAACCCCCTCAGCCGCCTACCTGTGGGTGGGTACAGGAGCCAGCGAGGCAGAGAAGACGGGGGCCCAGGAGCTGCTCAGGGTGCTGCGGGCCCAACCTGTGCAGGTGGCAGAAGGCAGCGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180-142-128,143-128,144-128-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(8.7=10.5)
A:
NA
C2:
PF0062617=Gelsolin=FE(84.1=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGCCTCTTCCAGGTC
R:
CTCGCTGCCTTCTGCCAC
Band lengths:
226-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains