MmuALTD1013373-4/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026879 | Gsn
Description
gelsolin [Source:MGI Symbol;Acc:MGI:95851]
Coordinates
chr2:35302493-35303342:+
Coord C1 exon
chr2:35302493-35302566
Coord A exon
chr2:35302567-35302661
Coord C2 exon
chr2:35303168-35303342
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
CTGTCCCACTCCACCTCCAGGTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
CCGAGTGGTCCAAGGCAAAGAGCCTGCACACCTCATGAGCTTGTTTGGCGGGAAGCCCATGATCATCTACAAGG
Seq A exon
GTGGCACCTCCCGTGATGGTGGGCAGACAGCTCCTGCCAGTATCCGCCTCTTCCAAGTGCGAGCCAGCAGCTCTGGAGCCACCAGGGCTGTGGAG
Seq C2 exon
GTGATGCCTAAGTCTGGTGCTCTGAACTCCAACGATGCCTTTGTGCTGAAAACCCCCTCCGCTGCCTACCTGTGGGTGGGCGCAGGAGCCAGTGAGGCGGAGAAGACCGGCGCCCAGGAGCTTCTGAAGGTGCTTCGGTCCCAGCATGTGCAGGTGGAAGAAGGCAGTGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026879-63-60,64-60,65-60,66-60,67-60-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(14.5=21.1),PF0062617=Gelsolin=PU(17.1=10.5)
A:
NA
C2:
PF0062617=Gelsolin=FE(84.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCTTGTTTGGCGGGAAG
R:
GGACCGAAGCACCTTCAGAAG
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types