HsaALTD1026495-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148288 | GBGT1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:20460]
Coordinates
chr9:133155901-133156065:-
Coord C1 exon
chr9:133156020-133156065
Coord A exon
NA
Coord C2 exon
chr9:133155901-133155936
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGG
5' ss Score
5.61
3' ss Seq
CTGGTCCTTCTTGGTTGCAGGTC
3' ss Score
9.31
Exon sequences
Seq C1 exon
CAACATGAAGCTGCACTACAAGAGGGAGAAGCCACTCCAGCCCGTG
Seq A exon
NA
Seq C2 exon
GTCACAGTACCCTCAGCCCAAGCTGCTGGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148288-12-10,13-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(15.2=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains