HsaALTD1026552-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130079630-130083602:+
Coord C1 exon
chr9:130079630-130079769
Coord A exon
NA
Coord C2 exon
chr9:130083565-130083602
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TTAAATGTTCTTGCTTCTAGATG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGTAAGAGTAAAGTCTCCACCAGAAGCTGGTACCCAGTTACCAAAGATCATCTTCAGCAGGGATGAGAAAGTCCTTGGTCAGAGCCAGGAGCCTAATGTTAACCCTGCTTCAGCAGGCAACCAGACCCAGAAGACACAAG
Seq A exon
NA
Seq C2 exon
ATGGTGGAAAGTCTAAAAGAAGTACAGTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-12-11,13-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.498 A=NA C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGAGCCAGGAGCCTAAT
R:
CCACTGTACTTCTTTTAGACTTTCCA
Band lengths:
94-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains