RnoALTD0012890-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10672535-10675352:-
Coord C1 exon
chr3:10675229-10675352
Coord A exon
chr3:10675213-10675228
Coord C2 exon
chr3:10672535-10672572
Length
16 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTCAATGTTTGTGCTTCTAGATG
3' ss Score
7.98
Exon sequences
Seq C1 exon
AGTCAAGGTCAGATCCCCACCAGAAGCTGGCAAGCAGTTACCCGAGATTGTCTTCAGCAAGGATGAGAAAGTCCCGAGTCGGAGCCAGGAGCCTGCTGTCAGCTCCAACCCCAAAGACAGCAAG
Seq A exon
GTGCAGAGAACCCCTG
Seq C2 exon
ATGGTTCCAAGGCTCAACGAAGTACAGTGGATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589-10-7,11-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.654
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGCAGTTACCCGAGATT
R:
CTTCGTTGAGCCTTGGAACCA
Band lengths:
118-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]