HsaALTD1027278-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60172308-60172998:-
Coord C1 exon
chr10:60172900-60172998
Coord A exon
chr10:60172541-60172899
Coord C2 exon
chr10:60172308-60172403
Length
359 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCACATTTTCCTTTTGCCAGAAT
3' ss Score
6.9
Exon sequences
Seq C1 exon
AATGGGTATACGCCATTACATCAAGCAGCACAGCAGGGGCATACGCATATAATAAATGTCTTACTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
Seq A exon
GTAAGCGCTCAGGGCCAGCTCAGGAGAAGAGGGAGGAGATAGATGGGCCTGGACTCTGGTGTCTTCTTACGTTTTTCATTGTACTTTCATGAAGAGGCATAAACAGAGCATTCAGTAGAATGAGGAAAGAAGGACAATAACCATATTGTTCTGAGCTGTTCAGAGAGAGAGAGATGATTAGTGTTTTATATGTGAAAACTACCTACTGCATTGTCACCTAGTAGGAAGTACACATGTAAGAAAAAAAAATTGTGTTGGTTTCATTGATTGCTTACTTAGAACGTTAAAAAGCCTCTTGGATTGCATGTGTAGCTGCCCAGACTTTGCTGTACAAACAGGTTAGGTGGGTTTTGTGCAAG
Seq C2 exon
AATGGGAATACTGCCCTTGGCATTGCCCGGCGCCTCGGCTACATCTCAGTAGTGGACACCCTGAAGATAGTGACCGAAGAGACCATGACCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-65-56,66-56,67-56,68-56-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=100.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTATACGCCATTACATCAAGC
R:
TGTGGTCATGGTCTCTTCGGT
Band lengths:
190-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains