HsaALTD1027278-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60172308-60172998:-
Coord C1 exon
chr10:60172900-60172998
Coord A exon
NA
Coord C2 exon
chr10:60172308-60172403
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TCACATTTTCCTTTTGCCAGAAT
3' ss Score
6.9
Exon sequences
Seq C1 exon
AATGGGTATACGCCATTACATCAAGCAGCACAGCAGGGGCATACGCATATAATAAATGTCTTACTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
Seq A exon
NA
Seq C2 exon
AATGGGAATACTGCCCTTGGCATTGCCCGGCGCCTCGGCTACATCTCAGTAGTGGACACCCTGAAGATAGTGACCGAAGAGACCATGACCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-65-56,66-56,67-56,68-56-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=100.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTATACGCCATTACATCAAGCA
R:
TGTGGTCATGGTCTCTTCGGT
Band lengths:
189-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains