MmuALTD1034361-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69898228-69899089:+
Coord C1 exon
chr10:69898228-69898323
Coord A exon
chr10:69898324-69898326
Coord C2 exon
chr10:69898994-69899089
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CCACATTTCCCTGCTTCCAGAAT
3' ss Score
7.69
Exon sequences
Seq C1 exon
AATGGATACACAGCACTGCACCAGGCTGCTCAGCAGGGCCACACGCATATCATCAATGTCTTGCTTCAGAACAACGCCTCCCCCAATGAACTCACT
Seq A exon
GTG
Seq C2 exon
AATGGGAACACAGCTCTGGCCATCGCCCGGCGCCTTGGTTACATCTCGGTGGTTGACACACTGAAGGTCGTGACGGAGGAAATTATGACCACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-53-63,54-63-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.8=100)
A:
NA
C2:
PF127962=Ank_2=PD(41.3=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTCAGAACAACGCCTCC
R:
TCAGTGTGTCAACCACCGAGA
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types