RnoALTD0002689-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20352425-20353302:+
Coord C1 exon
chr20:20352425-20352520
Coord A exon
chr20:20352521-20352523
Coord C2 exon
chr20:20353207-20353302
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CTACATTTCCCTGCTTCCAGAAT
3' ss Score
7.63
Exon sequences
Seq C1 exon
AATGGATACACGCCACTGCACCAGGCAGCCCAGCAGGGCCACACACACATCATCAACGTCCTGCTCCAGAACAACGCTTCCCCCAATGAACTCACT
Seq A exon
GTG
Seq C2 exon
AATGGGAACACAGCCCTGGCCATCGCCCGACGCCTTGGCTACATCTCGGTGGTTGACACCCTAAAGGTCGTGACAGAGGAAATTATGACCACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-34-39,35-39-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=100.0)
A:
NA
C2:
PF127962=Ank_2=PD(38.7=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAACGTCCTGCTCCAGA
R:
TCAACCACCGAGATGTAGCCA
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]