GgaALTD1026470-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8434665-8435232:+
Coord C1 exon
chr6:8434665-8434763
Coord A exon
NA
Coord C2 exon
chr6:8435137-8435232
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
ACAATTTTTTCAATTGCTAGAAT
3' ss Score
4.48
Exon sequences
Seq C1 exon
AACGGGTACACACCGCTGCACCAGGCTGCACAGCAGGGGCACACCCACATCATCAACGTTCTGCTCCAGCACGGTGCGGCGCCCAACGAGCTCACTGTG
Seq A exon
NA
Seq C2 exon
AATGGAAACACTGCCCTCGCCATCGCGAAGCGACTTGGCTACATTTCAGTCGTTGACACATTGAAGGTGGTGACAGAGGAGACCATGACTACAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-42-28,43-28-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGGTACACACCGCTG
R:
AGTCATGGTCTCCTCTGTCACC
Band lengths:
189-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]