HsaALTD1027435-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145823422-145844652:-
Coord C1 exon
chr4:145835346-145844652
Coord A exon
chr4:145835129-145835345
Coord C2 exon
chr4:145823422-145823525
Length
217 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTCCCCCTCCCCCACCCCAGCCC
3' ss Score
7.71
Exon sequences
Seq C1 exon
AGGTAAAATGGGGGTATTGTAAGGAGAGTTTATAGTCTTTAAAAGGCCATGCTGTAGCAGGTGAGTGATAACAGGCTCTAATCCTTTTAAAGCGTGCTGCGGGATGGGATACTGGCGTTGAGTGGGGTAAGGGTGATTAGGTTTTAATGAGATGGTAAGGGGTGCATGATCGGTCGCCAAGGAGGGAGTAGAGGTATCTTATACTTGTGGGTTAAGGTGGGGGGATACAAGAGGAGGACGCAAAGGAGGCTTTGGATTGGGAAGAAGGGCGGCAATGAGATATTGCTGTAGTCCAGGAATAGTCAGGGAAGCAGATAATTTAGTTAAAGTGTCTCAGCCTAATAAGGGAACTGGGCAGGTGGGGATAACTAAAAAGGAGTGCTTAAAAGAGTGTTGTCTAAGTTGGCACCAGAGTTGGGGAGTTTTAAGAGGTTTAGAAGCCTGGCTGTCAATACCCACAACAGTTATGGAGGCAAGGGAAACAGGCCCTTGAAAAGAAG
Seq A exon
GTAATGTAGAGTGGGTAGCCTCCGAATTGATTAAGAAGGGGACGGGCTTACCTTCCACTGTGAGAGTTACCCGAAGCTCAGCATCCGTGATGGTCTAGGGGGCTTCTGAGGCGATCGGGCAGTGTCAGTCTTCAGCCGCTAAGCCGAGAAGATCTGGGAAGGAGTCAGTCAGAGAGCCTTGGGCTAGAGTTCCAGGGGCTCTGGGAGTGGCTGCTAG
Seq C2 exon
CCCTTTCTTTTCAGAAGACACATTTAGACAATCACCATTCACCTCCAATTCAAAAGAACTGCTGCCCAGTGACTCCGTGCTGCACGGAAGAATATCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-34-24,35-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.484
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGGCGGCAATGAGATAT
R:
ACTGGGCAGCAGTTCTTTTGA
Band lengths:
308-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains