HsaALTD1028248-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000154262 | ABCA6
Description
ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr17:69128619-69129751:-
Coord C1 exon
chr17:69129610-69129751
Coord A exon
chr17:69129136-69129609
Coord C2 exon
chr17:69128619-69128804
Length
474 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
ATGTCTTCTCTCTCTTGCAGGTA
3' ss Score
14.77
Exon sequences
Seq C1 exon
GCTCTCCTGGGGTCTAATCTATGCTGGCTTCATCTTTATTATTTCCATATTCGTTACAATTATCATAACATTCACCCAAATTATAGTCATGACTGGCTTCATGGTCATATTTATACTCTTTTTTTTATATGGCTTATCTTTG
Seq A exon
GTAAGTTGATACATTTATTACCACTTTCTCTGCTTTAGATCTTAGCTATATGTAGCTAATATTAATGCCCTAGTAGGTTACTGCAATCACTACTTTCATGTCCATTGTGTGTGTGCATGTGTGTGTCCTTGTGTGTACTTGAAATAGTTTCTATGGAGTGAAAAAGTTATGTAATCCAAATAAAATTTGACTTGCCTTTTGCATAAAGGTCTGAACTAATGAAATGATGTATCAAAAAGAAAAAACAATGCTGACTCTAAAATATCAAAGTCTTTTCTGTATAATTATTGAGGTTATTTTTGAGGGGTGGACCCAATTTTTTTTCCCTTAAGGGTGCTCATCACATGGTAGCTGATCACAATATCTCTTCTCCCTCTAATATTCTGTCTCATACTTACTTCTCGTTTCACTCCGCTCTGCCTTCTCTGAACAAGAACCTCTAATTTCCATCTTCCAGGTTGTTTTCTGCAGAAA
Seq C2 exon
GTAGCTTTGGTGTTCCTGATGAGTGTGCTGTTAAAGAAAGCTGTCCTCACCAATTTGGTTGTGTTTCTCCTTACCCTCTTTTGGGGATGTCTGGGATTCACTGTATTTTATGAACAACTTCCTTCATCTCTGGAGTGGATTTTGAATATTTGTAGCCCTTTTGCCTTTACTACTGGAATGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154262-14-10,15-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGGGGTCTAATCTATGCTG
R:
CTGAATCATTCCAGTAGTAAAGGCA
Band lengths:
326-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains