Special

ENSG00000154262 @ hg38

Biotype
protein_coding
Gene Symbol
ABCA6
Description
ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr17:69078702-69141888:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
1.48
57.58
0
Alternative 3'ss
6
chr17:69114932-69114937
-
98.52
57.58
0
Alternative 5'ss
0
NA
-
92.2
95.06
0
Alternative 5'ss
474
chr17:69129136-69129609
-
7.8
95.06
0
Exon Skipping
78
chr17:69089465-69089542
-
97.29
24
0
Exon Skipping
120
chr17:69091143-69091262
-
89.94
50.63
0
Exon Skipping
139
chr17:69113222-69113360
-
96.39
29.85
0
Exon Skipping
104
chr17:69134639-69134742
-
93.28
17.91
0
Exon Skipping
142
chr17:69129610-69129751
-
92.67
50
0
Exon Skipping
52
chr17:69124378-69124429
-
3.07
49.4
0
Exon Skipping
355
chr17:69134843-69135197
-
8.1
38.17
0
Intron Retention
257
chr17:69113361-69113617
-
9.6
39.6
0
Intron Retention
948
chr17:69112274-69113221
-
8.17
28.97
0
Intron Retention
399
chr17:69105629-69106027
-
8.19
30.16
0
Intron Retention
2769
chr17:69098028-69100796
-
7.93
36.71
0
Intron Retention
4977
chr17:69091263-69096239
-
11.9
40.13
0
Intron Retention
1600
chr17:69089543-69091142
-
10.57
34.84
0
Intron Retention
1206
chr17:69088259-69089464
-
22.98
51.51
0
Intron Retention
693
chr17:69087474-69088166
-
10.97
41.35
0
Intron Retention
1349
chr17:69134743-69136091
-
34.27
67.51
0
Intron Retention
771
chr17:69133868-69134638
-
23.09
63.64
0
Intron Retention
3889
chr17:69129752-69133640
-
11.9
43.52
0
Intron Retention
805
chr17:69128805-69129609
-
11.69
61.9
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000044749 Abca6 2-to-1
Mouse mm9 ENSMUSG00000044749 Abca6 2-to-1
Rat rn6 ENSRNOG00000046890 Abca6 1-to-1
Cow bosTau6 ENSBTAG00000006921 ABCA6 1-to-1
Chicken galGal4 ENSGALG00000021395 4-to-2
Chicken galGal4 ENSGALG00000021399 4-to-2
Chicken galGal3 ENSGALG00000021395 4-to-2
Chicken galGal3 ENSGALG00000021399 4-to-2