HsaEX0000284 @ hg38
Exon Skipping
Gene
ENSG00000154262 | ABCA6
Description
ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr17:69088167-69096353:-
Coord C1 exon
chr17:69096240-69096353
Coord A exon
chr17:69089465-69089542
Coord C2 exon
chr17:69088167-69088258
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTGTCTTTTCAGAGA
3' ss Score
10.49
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GTTATAGTTACTCCTGGTTATGCAGCTTCTCTTGTCTTCTTCATATATATGATATCATTTATTTTTCGCAAAAGGAGAAAAAACAGTGGCCTTTGGTCATTTTACTTCTTTTTT
Seq A exon
AGAGACCAGGAGCACTACAGAGAATTTCCAGAGGCAAATTTTGAATTGAGTGCCACTGATTTTCTAGTCTGCTTCATA
Seq C2 exon
CCCTACTTTCAGACTTTGCTATTCGTTTTTGTTCTAAGATGCATGGAACTAAAATGTGGAAAGAAAAGAATGCGAAAAGATCCTGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154262_MULTIEX3-3/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.2=100)
A:
PF126982=ABC2_membrane_3=FE(6.9=100)
C2:
PF126982=ABC2_membrane_3=PD(2.8=32.3)
Main Skipping Isoform:
ENST00000284425fB8363
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGGTTATGCAGCTTCTC
R:
TTCGCATTCTTTTCTTTCCACA
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development