HsaEX0000284 @ hg19
Exon Skipping
Gene
ENSG00000154262 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:36]
Coordinates
chr17:67084308-67087403:-
Coord C1 exon
chr17:67087284-67087403
Coord A exon
chr17:67085606-67085683
Coord C2 exon
chr17:67084308-67084399
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTGTCTTTTCAGAGA
3' ss Score
10.49
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCCTCCACCATCATGTTTTCCATCACTTTAATCAATCATTTTGACCTAAGTATATTGATTACCACCATGGTATTGGTTCCTTCATATACCTTGCTTGGATTTAAAACTTTTTTGGAAGTG
Seq A exon
AGAGACCAGGAGCACTACAGAGAATTTCCAGAGGCAAATTTTGAATTGAGTGCCACTGATTTTCTAGTCTGCTTCATA
Seq C2 exon
CCCTACTTTCAGACTTTGCTATTCGTTTTTGTTCTAAGATGCATGGAACTAAAATGTGGAAAGAAAAGAATGCGAAAAGATCCTGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154262-'29-29,'29-28,30-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.8=100)
A:
PF126982=ABC2_membrane_3=FE(6.9=100)
C2:
PF126982=ABC2_membrane_3=PD(2.8=32.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCACCATCATGTTTTCCA
R:
TCCACATTTTAGTTCCATGCATCT
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)