BtaEX6091140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62078603-62082271:+
Coord C1 exon
chr19:62078603-62078722
Coord A exon
chr19:62080676-62080753
Coord C2 exon
chr19:62082180-62082271
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGGTCTTTGCAGAGA
3' ss Score
10.32
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GTCACGGTCATCGCATTTGGCATCATTGTGCTATTTGGCTCAGGCGTCCCTGTCCTGATACCTTGCATGGCTTTAGCTCCCTCAGCAACCTTGATTGGATTTATAGCTTTTTTGCAAGAG
Seq A exon
AGAATCCATCGATACTGGATAAAATATCAAGAGGCAAATTACGACCTGAGTGCAGCTGACTTTCTAGTGTGCCTAATA
Seq C2 exon
CCTTACTTCCAGGCTTTGCTCTTCATGTTTGTCCTGCGATGCCTAGAAGCAAAATGTGGAAAGAAAATAATGCAAAAGGATCCTGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'33-31,'33-30,34-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.8=100)
A:
PF126982=ABC2_membrane_3=FE(6.9=100)
C2:
PF126982=ABC2_membrane_3=PD(3.0=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCATCGCATTTGGCATCA
R:
TTTGCTTCTAGGCATCGCAGG
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]