RnoEX0004907 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98489662-98492797:-
Coord C1 exon
chr10:98492678-98492797
Coord A exon
chr10:98491189-98491266
Coord C2 exon
chr10:98489662-98489753
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTACCTGTTTTTCTTTTCAGAGA
3' ss Score
11.51
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GTCATAACGATTATGTTTGACACGGTTTTGATGGATCCCTTCAATGAGGCACTGCTTATTTCTGCCATGATGTTAGTTCCTTCCTTTTCATTGAATGCGCTCCTGATTGTCTTGGAAATG
Seq A exon
AGAGCCTACCAGTACTATCGAGAATTTGGAGAAAGCAAATATGGTTTATCGGGGGTTGATCTTCTCTTATGCCTAATA
Seq C2 exon
CCTTACTTCCATACTTTGCTGTTCATTTTTGTTCTGAGATGCCTGGAACTGAAGTATGGGAAGAATGTAGTACGGAAGGACCCCCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'32-38,'32-37,33-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.8=100)
A:
PF126982=ABC2_membrane_3=FE(6.9=100)
C2:
PF126982=ABC2_membrane_3=PD(3.0=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAATGAGGCACTGCTT
R:
GAGGGGGTCCTTCCGTACTAC
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]