HsaALTD1028260-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000154265 | ABCA5
Description
ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr17:69271162-69274128:-
Coord C1 exon
chr17:69273959-69274128
Coord A exon
NA
Coord C2 exon
chr17:69271162-69271289
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TGCTTATTTTCTAACACCAGACT
3' ss Score
5.19
Exon sequences
Seq C1 exon
GTTGCTTCTGCTTTTAATTTTTTTCACAGTTCAGATTTTTATGTTTTTGGTTCATCACTCTTTTAAAAATGCTGTGGTTCCCATCAAACTTGTTCCAGACTTATATTTTCTAAAACCTGGAGACAAACCACATAAATACAAAACAAGTCTGCTTCTTCAAAATTCTGCTG
Seq A exon
NA
Seq C2 exon
ACTCAGATATCAGTGATCTTATTAGCTTTTTCACAAGCCAGAACATAATGGTGACGATGATTAATGACAGTGACTATGTATCCGTGGCTCCCCATAGTGCGGCTTTAAATGTGATGCATTCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265-46-57,47-57-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(11.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGCTTCTTCAAAATTCTGCTG
R:
GGGGAGCCACGGATACATAGT
Band lengths:
118-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains