HsaALTD1028853-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr21:31339243-31464035:-
Coord C1 exon
chr21:31463983-31464035
Coord A exon
chr21:31463916-31463982
Coord C2 exon
chr21:31339243-31339422
Length
67 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTCTTATGTTGCTCTTATAGGTA
3' ss Score
10.96
Exon sequences
Seq C1 exon
GTTGATGGTCGCATTCCAGATGTAAACAGCTTCAGAAGCCTGACGGTCATATG
Seq A exon
GTGAGCAGTTTACACTTTCATATACGCCCTGTCATGTGCTTTGAAGGACTTTCTAGGGGCATCAAGG
Seq C2 exon
GTAGAATCACTGTGGACTGAGACCCACCTTTCTAGACCTGAAGCCCAGGAGGAGGAAGAGGAGGCTGGTTGGTACCATGGGCATAATGCTCTGAATCCTAGTCTCTCACCTAGTATGTGAGCAGTCCCTGCAGATGGCCCATTTGGAGATCTTGACAAAGCCTCTTCTGTTTCCAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299-15-17,16-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGCCTGACGGTCATATG
R:
ATCTCCAAATGGGCCATCTGC
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains