HsaEX0064949 @ hg38
Exon Skipping
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr21:31339243-31558977:-
Coord C1 exon
chr21:31558927-31558977
Coord A exon
chr21:31463983-31464035
Coord C2 exon
chr21:31339243-31339422
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTACCTTCCAGGTT
3' ss Score
12.04
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCCCCGCATCGTGCCCGGCCCCGTCGCGGAGATCCCGGACGACCGTCGCGG
Seq A exon
GTTGATGGTCGCATTCCAGATGTAAACAGCTTCAGAAGCCTGACGGTCATATG
Seq C2 exon
GTAGAATCACTGTGGACTGAGACCCACCTTTCTAGACCTGAAGCCCAGGAGGAGGAAGAGGAGGCTGGTTGGTACCATGGGCATAATGCTCTGAATCCTAGTCTCTCACCTAGTATGTGAGCAGTCCCTGCAGATGGCCCATTTGGAGATCTTGACAAAGCCTCTTCTGTTTCCAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299-'1-17,'1-11,15-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development