MmuEX6063287 @ mm9
Exon Skipping
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89956181-90144014:-
Coord C1 exon
chr16:90143930-90144014
Coord A exon
chr16:90066766-90066817
Coord C2 exon
chr16:89956181-89956352
Length
52 bp
Sequences
Splice sites
3' ss Seq
CATTTCTTTTGAACTTCTAGGTT
3' ss Score
9.32
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGGCTTCGGCGCCCGCAGCCCCAGGGGCCCAGCGGCCCCGCTTTGTGCCTGGCCAGGTCTTCAAGATCCTGGGTGAACGTCACTG
Seq A exon
GTTGATGGCTACTTCTGGATGCTGACCCTGTCCGAAGCTTGAGCTCCAAATG
Seq C2 exon
GTAGAACCATTGTGGACTGAAACCCACCTTTCCAGATCTGAAAGGAAGACTGAGGAAGAGGAAGGGAGGGGACAGTCCCGGAGACAATTCTAGTCCCTCACTCAGGACTTGAGCAGCGCCTTCAGATGGCACCTTTGGAGATCTTGACCAAGGCTCTTCTGTTTGGCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489-'1-10,'1-0,4-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGGTCTTCAAGATCCT
R:
AGGGACTAGAATTGTCTCCGGG
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: