HsaEX0064949 @ hg19
Exon Skipping
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:11805]
Coordinates
chr21:32711558-32931290:-
Coord C1 exon
chr21:32931240-32931290
Coord A exon
chr21:32836296-32836348
Coord C2 exon
chr21:32711558-32711737
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTACCTTCCAGGTT
3' ss Score
12.04
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCCCCGCATCGTGCCCGGCCCCGTCGCGGAGATCCCGGACGACCGTCGCGG
Seq A exon
GTTGATGGTCGCATTCCAGATGTAAACAGCTTCAGAAGCCTGACGGTCATATG
Seq C2 exon
GTAGAATCACTGTGGACTGAGACCCACCTTTCTAGACCTGAAGCCCAGGAGGAGGAAGAGGAGGCTGGTTGGTACCATGGGCATAATGCTCTGAATCCTAGTCTCTCACCTAGTATGTGAGCAGTCCCTGCAGATGGCCCATTTGGAGATCTTGACAAAGCCTCTTCTGTTTCCAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299-'1-5,'1-1,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)