HsaALTD1029005-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000156853 | ZNF689
Description
zinc finger protein 689 [Source:HGNC Symbol;Acc:HGNC:25173]
Coordinates
chr16:30609525-30610379:-
Coord C1 exon
chr16:30610202-30610379
Coord A exon
NA
Coord C2 exon
chr16:30609525-30609638
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTCC
5' ss Score
-1.1
3' ss Seq
GATTTGTTCTCTTTCCCCAGGGT
3' ss Score
10.41
Exon sequences
Seq C1 exon
TTGAGGGCAAAGAGGTTAGGAAGCCGGCATGGCGCTCCGGTCAATAAAATCGATAGCTGGAAGCTGCCTGTGTTCCAGGCAAAGGCGGTGCGGTAGCAGCGCCGCCATTTTCCCCGAAGGCATCTTCCGGTGCCTTTCACCCAAGTTCGGGCAGGAGTTTCCTGAATAACAGCAAAAG
Seq A exon
NA
Seq C2 exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAACACCGATGACTGGGAACCGGCTGCTCTAGATCCGCAGGAGTACCCGAGAGGGCTAACAGTCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156853-3-6,4-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=NA C2=0.449
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAAAGAGGTTAGGAAGC
R:
TCTGGACTGTTAGCCCTCTCG
Band lengths:
286-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains