HsaEX0074197 @ hg38
Exon Skipping
Gene
ENSG00000156853 | ZNF689
Description
zinc finger protein 689 [Source:HGNC Symbol;Acc:HGNC:25173]
Coordinates
chr16:30609525-30623869:-
Coord C1 exon
chr16:30623740-30623869
Coord A exon
chr16:30610588-30610782
Coord C2 exon
chr16:30609525-30609638
Length
195 bp
Sequences
Splice sites
3' ss Seq
CATAATTCCCTCCCCTAAAGGGC
3' ss Score
6.25
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
TCCCAAACCAACAGCCACAAGTGGTGCCTAATCAGGGACGTGAAGGAAGAAGATCTGCTGGAGCAGAGAAACTGAAACTGACCAGATGAGTGAGAAACCCCAGGACAAATCTGCTGGCAGAGGATATAAG
Seq A exon
GGCAAACAAAGAAGATAACCATTCTCCAAAGTCAAGGATGCTCTGAGAACACCAGTAAAAGGAACTCAGGATAATCTCAGCTCTAACTCGGCCAGAGTGGCTCCATCGCTCAAATCGTTCCCTCCTTCAGTGATTGGCTGAGCCTGCCAGAGTCGAACAGCGGAAAGCAGCCCCGGGGCCTCTTGCTGCCCCCAG
Seq C2 exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAACACCGATGACTGGGAACCGGCTGCTCTAGATCCGCAGGAGTACCCGAGAGGGCTAACAGTCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156853_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.449
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAACCAACAGCCACAAG
R:
TCTCTGGACTGTTAGCCCTCT
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development