HsaEX0074197 @ hg19
Exon Skipping
Gene
ENSG00000156853 | ZNF689
Description
zinc finger protein 689 [Source:HGNC Symbol;Acc:25173]
Coordinates
chr16:30620846-30635333:-
Coord C1 exon
chr16:30635061-30635333
Coord A exon
chr16:30621523-30622103
Coord C2 exon
chr16:30620846-30620959
Length
581 bp
Sequences
Splice sites
3' ss Seq
CATAATTCCCTCCCCTAAAGGGC
3' ss Score
6.25
5' ss Seq
AAGGTTTCC
5' ss Score
-1.1
Exon sequences
Seq C1 exon
CTGTCGATTCTACCTAATAAATACGAAGGGCTGTAGAAGCTCAGGGCCCTTATTCCCTAGAAGCAAGGAGCCCCCTGACCCCTTCCTTAAAACAGATCCTTTTGTCTTTGTCTTCATTTCTGCGTTTGTCCTCCTTCATTCAGTCCCAAACCAACAGCCACAAGTGGTGCCTAATCAGGGACGTGAAGGAAGAAGATCTGCTGGAGCAGAGAAACTGAAACTGACCAGATGAGTGAGAAACCCCAGGACAAATCTGCTGGCAGAGGATATAAG
Seq A exon
GGCAAACAAAGAAGATAACCATTCTCCAAAGTCAAGGATGCTCTGAGAACACCAGTAAAAGGAACTCAGGATAATCTCAGCTCTAACTCGGCCAGAGTGGCTCCATCGCTCAAATCGTTCCCTCCTTCAGTGATTGGCTGAGCCTGCCAGAGTCGAACAGCGGAAAGCAGCCCCGGGGCCTCTTGCTGCCCCCAGGTCGGTGCAAGTCGCTTCACAACTCCTTGTAGTCGCCTGATCCTAGCAGTCCAGCTTCCTGCCCTTATGCAGCTCTTGGCTTCGTTCAAACGGACCGCCTTTGCTAGCACCCAATCAGAACGCTCGATCTTCGGCTCTCGTCCAATGAACGCGCGTATTGGGGAGGGGAAAAAAGACGGCGTGAAGCCCAATCGCAGCGCCATTACACTTGAGGGCAAAGAGGTTAGGAAGCCGGCATGGCGCTCCGGTCAATAAAATCGATAGCTGGAAGCTGCCTGTGTTCCAGGCAAAGGCGGTGCGGTAGCAGCGCCGCCATTTTCCCCGAAGGCATCTTCCGGTGCCTTTCACCCAAGTTCGGGCAGGAGTTTCCTGAATAACAGCAAAAG
Seq C2 exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAACACCGATGACTGGGAACCGGCTGCTCTAGATCCGCAGGAGTACCCGAGAGGGCTAACAGTCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156853_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.449
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGAAGCTCAGGGCCCTT
R:
TCTGGACTGTTAGCCCTCTCG
Band lengths:
354-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)