HsaALTD1029727-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000159199 | ATP5G1
Description
ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:HGNC:841]
Coordinates
chr17:48893409-48894449:+
Coord C1 exon
chr17:48893409-48893456
Coord A exon
chr17:48893457-48893592
Coord C2 exon
chr17:48894372-48894449
Length
136 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GTGGCTTTCTGATTTTACAGATC
3' ss Score
9.58
Exon sequences
Seq C1 exon
ACTGAAAAAATGCAGACCGCCGGGGCATTATTCATTTCTCCAGCTCTG
Seq A exon
GTAAGGTGCCGCGCCGCAGTGCTCTGTAGTACCAGGTGTATGGTGTGGACGCCATCAGTGTTTAATGAATGAACCCAGGGGAGCTTGGCGTCCTGATGATGTAGGCTCTTTGAGGTGGCTGTAGGATGTGATGAAG
Seq C2 exon
ATCCGCTGTTGTACCAGGGGTCTAATCAGGCCTGTGTCTGCCTCCTTCTTGAATAGCCCAGTGAATTCATCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159199-5-5,6-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATGCAGACCGCCGGG
R:
TGTTTAGATGAATTCACTGGGCT
Band lengths:
120-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains